centrifuge: add linux-aarch64 build #48450
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Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
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aliciaaevans
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Jun 14, 2024
* centrifuge: add linux-aarch64 build Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * Add a patch for fixing the build on linux aarch64 Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> --------- Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
aliciaaevans
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Jun 17, 2024
* [ci skip] remove build failure record for recipe recipes/cooltools/0.3.2 * round of bulk fixes * bulk fixes and skips * [ci run] trigger bulk run * [ci skip] add build failure record for recipe recipes/pywgsim * [ci skip] add build failure record for recipe recipes/biobloomtools * [ci skip] add build failure record for recipe recipes/bwapy * [ci skip] add build failure record for recipe recipes/whatshap * [ci skip] add build failure record for recipe recipes/gimmemotifs * [ci skip] add build failure record for recipe recipes/umi_tools * [ci skip] add build failure record for recipe recipes/pyprophet * [ci skip] add build failure record for recipe recipes/libsbml * [ci skip] add build failure record for recipe recipes/rnablueprint * [ci skip] add build failure record for recipe recipes/pyprophet * [ci skip] remove build failure record for recipe recipes/ont_vbz_hdf_plugin * [ci skip] remove build failure record for recipe recipes/macs2 * [ci skip] add build failure record for recipe recipes/bwapy * [ci skip] add build failure record for recipe recipes/pasta * [ci skip] add build failure record for recipe recipes/yahmm * [ci skip] add build failure record for recipe recipes/sorted_nearest * [ci skip] remove build failure record for recipe recipes/macs2 * [ci skip] add build failure record for recipe recipes/moabs * [ci skip] add build failure record for recipe recipes/glimmerhmm * [ci skip] add build failure record for recipe recipes/delly * [ci skip] remove build failure record for recipe recipes/ms2rescore-rs * [ci skip] add build failure record for recipe recipes/intarna/2.x * [ci skip] add build failure record for recipe recipes/genometools-genometools * [ci skip] add build failure record for recipe recipes/pasta * [ci skip] remove build failure record for recipe recipes/gap2seq * [ci skip] add build failure record for recipe recipes/python-hppy * [ci skip] add build failure record for recipe recipes/rpbp * [ci skip] add build failure record for recipe recipes/nextpolish * [ci skip] add build failure record for recipe recipes/augustus/3.3.3 * [ci skip] add build failure record for recipe recipes/moabs * [ci skip] add build failure record for recipe recipes/lofreq * [ci skip] add build failure record for recipe recipes/yahmm * [ci skip] add build failure record for recipe recipes/maxentpy * [ci skip] add build failure record for recipe recipes/mauvealigner * [ci skip] add build failure record for recipe recipes/medaka * [ci skip] add build failure record for recipe recipes/umi_tools * [ci skip] add build failure record for recipe recipes/rpbp * [ci skip] add build failure record for recipe recipes/umi_tools * [ci skip] add build failure record for recipe recipes/simlord * [ci skip] remove build failure record for recipe recipes/cooltools/0.3.2 * [ci skip] add build failure record for recipe recipes/medaka * python-libsbml was moved to conda-forge * skip python 3.12 * skip python 3.12 * skiplist with category * skiplist with category * use python var * remove unnecessary constraint * bump divergent build * skip python 3.12 * [ci run] trigger bulk run * indent log * [ci run] trigger bulk run * [ci skip] add build failure record for recipe recipes/gimmemotifs * [ci skip] add build failure record for recipe recipes/pywgsim * [ci skip] add build failure record for recipe recipes/yahmm * [ci skip] add build failure record for recipe recipes/moabs * [ci skip] add build failure record for recipe recipes/libsbml * [ci skip] add build failure record for recipe recipes/sorted_nearest * [ci skip] add build failure record for recipe recipes/maxentpy * [ci skip] add build failure record for recipe recipes/medaka * [ci skip] add build failure record for recipe recipes/yahmm * [ci skip] add build failure record for recipe recipes/rnablueprint * [ci skip] add build failure record for recipe recipes/glimmerhmm * [ci skip] add build failure record for recipe recipes/mauvealigner * [ci skip] remove build failure record for recipe recipes/nanopolish * [ci skip] add build failure record for recipe recipes/delly * [ci skip] add build failure record for recipe recipes/pasta * [ci skip] add build failure record for recipe recipes/genometools-genometools * [ci skip] add build failure record for recipe recipes/python-hppy * [ci skip] add build failure record for recipe recipes/intarna/2.x * [ci skip] add build failure record for recipe recipes/htstream * [ci skip] add build failure record for recipe recipes/whatshap * [ci skip] add build failure record for recipe recipes/pasta * [ci skip] add build failure record for recipe recipes/rpbp * [ci skip] add build failure record for recipe recipes/nextpolish * [ci skip] add build failure record for recipe recipes/augustus/3.3.3 * [ci skip] add build failure record for recipe recipes/lofreq * [ci skip] add build failure record for recipe recipes/pydnase * [ci skip] add build failure record for recipe recipes/ntsynt * [ci skip] add build failure record for recipe recipes/cgat-apps * [ci skip] remove build failure record for recipe recipes/unicycler/0.4.4 * [ci skip] add build failure record for recipe recipes/goldrush * remove subdag-depth * skiplist and categorize build failures * bump build number * add run_exports * try limiting py version more * build failure * build failure category and skiplist * skiplist and categorize build failure * [ci run] trigger bulk run * [ci skip] add build failure record for recipe recipes/rapsearch * [ci skip] add build failure record for recipe recipes/rnablueprint * [ci skip] add build failure record for recipe recipes/pywgsim * [ci skip] add build failure record for recipe recipes/libsbml * [ci skip] add build failure record for recipe recipes/mauvealigner * [ci skip] add build failure record for recipe recipes/cgat-apps * [ci skip] add build failure record for recipe recipes/glimmerhmm * [ci skip] add build failure record for recipe recipes/cytocad * [ci skip] add build failure record for recipe recipes/delly * [ci skip] add build failure record for recipe recipes/nextpolish * [ci skip] remove build failure record for recipe recipes/rpbp * [ci skip] add build failure record for recipe recipes/cgat-apps * skiplist build failures * bump divergent * skiplist * update build failure sha * moved to conda-forge * skip build failure * bump for divergent build strings * [ci run] trigger bulk run * [ci skip] add build failure record for recipe recipes/gemini * [ci skip] remove build failure record for recipe recipes/perl-bio-db-hts * [ci skip] add build failure record for recipe recipes/albatradis * [ci skip] add build failure record for recipe recipes/glimmerhmm * [ci skip] add build failure record for recipe recipes/genometools-genometools * [ci skip] add build failure record for recipe recipes/gemini * [ci skip] add build failure record for recipe recipes/cgat-apps * [ci skip] add build failure record for recipe recipes/nextpolish * [ci skip] add build failure record for recipe recipes/delly * [ci skip] add build failure record for recipe recipes/gemini * [ci skip] add build failure record for recipe recipes/chorus2 * [ci skip] add build failure record for recipe recipes/cgat-apps * bulk fixes and failures * [ci run] trigger bulk run * [ci skip] add build failure record for recipe recipes/cgat-apps * [ci skip] fix pcaone openmp dependency * [ci skip] remove build failure record for recipe recipes/genometools-genometools * [ci skip] add build failure record for recipe recipes/cgat-apps * [ci skip] add build failure record for recipe recipes/tobias * remove caching as it causes problems and doesn't save much time * move run_exports to correct location * add run_exports * rebuild failure * skiplist build failures * [ci run] trigger bulk run * [ci skip] add build failure record for recipe recipes/maxentpy * [ci skip] remove build failure record for recipe recipes/pcaone * [ci skip] add build failure record for recipe recipes/maxentpy * [ci skip] remove build failure record for recipe recipes/pcaone * [ci skip] add build failure record for recipe recipes/pydnase * [ci skip] add build failure record for recipe recipes/ntsynt * [ci skip] add build failure record for recipe recipes/nanovar * [ci skip] add build failure record for recipe recipes/chorus2 * [ci skip] remove build failure record for recipe recipes/rpbp * bulk fixes and failures * [ci run] trigger bulk run * remove bad character * [ci skip] add build failure record for recipe recipes/chorus2 * [ci skip] add build failure record for recipe recipes/whatshap * bulk fixes and failures * [ci run] trigger bulk run * exclude bioconda-repodata-patches * the other one is not the same * only run linux but add extra runners * [ci run] trigger bulk run * rebuild osx failures * revert runner changes * add run_exports * remove build failure * skiplist * [ci run] trigger bulk run * [ci skip] remove build failure record for recipe recipes/gsalign * [ci skip] remove build failure record for recipe recipes/bustools * [ci skip] remove build failure record for recipe recipes/metabuli * [ci skip] remove build failure record for recipe recipes/nonpareil * [ci skip] remove build failure record for recipe recipes/f5c * [ci skip] remove build failure record for recipe recipes/sankoff * [ci skip] remove build failure record for recipe recipes/humid * [ci skip] add build failure record for recipe recipes/pepsirf * [ci skip] remove build failure record for recipe recipes/flexiplex * [ci skip] remove build failure record for recipe recipes/gatb * [ci skip] remove build failure record for recipe recipes/stare-abc * [ci skip] remove build failure record for recipe recipes/encode-blacklist * [ci skip] add build failure record for recipe recipes/phyloacc * [ci skip] remove build failure record for recipe recipes/parascopy * [ci skip] remove build failure record for recipe recipes/metagraph * [ci skip] remove build failure record for recipe recipes/msisensor-pro * [ci skip] add build failure record for recipe recipes/verifybamid2 * [ci skip] remove build failure record for recipe recipes/ksnp * [ci skip] add build failure record for recipe recipes/ataqv * [ci skip] remove build failure record for recipe recipes/arriba * add run_exports * skip build failures * [ci run] trigger bulk run * [ci skip] remove build failure record for recipe recipes/scelestial * [ci skip] remove build failure record for recipe recipes/fastsimbac * [ci run] trigger bulk run * [ci skip] remove build failure record for recipe recipes/mgems * [ci skip] add build failure record for recipe recipes/mykrobe * [ci skip] add build failure record for recipe recipes/pegasuspy * [ci skip] add build failure record for recipe recipes/spades * [ci skip] remove build failure record for recipe recipes/jcvi * [ci skip] remove build failure record for recipe recipes/rpbp * [ci skip] add build failure record for recipe recipes/dicey * [ci skip] add build failure record for recipe recipes/zol * revert temporary CI changes * bump divergent build strings * skiplist build failures * [ci run] trigger bulk run * [ci skip] add build failure record for recipe recipes/dinopy * [ci skip] add build failure record for recipe recipes/dinopy * [ci skip] add build failure record for recipe recipes/dicey * [ci skip] remove build failure record for recipe recipes/tiddit * [ci skip] add build failure record for recipe recipes/dinopy * [ci skip] add build failure record for recipe recipes/phispy * [ci skip] add build failure record for recipe recipes/pyopal * [ci skip] add build failure record for recipe recipes/dicey * [ci skip] add build failure record for recipe recipes/zol * [ci skip] add build failure record for recipe recipes/pegasuspy * [ci skip] add build failure record for recipe recipes/bamread * skiplist build failures * bump build number * [ci run] trigger bulk run * [ci skip] add build failure record for recipe recipes/dinopy * [ci skip] add build failure record for recipe recipes/pegasuspy * [ci skip] add build failure record for recipe recipes/dinopy * [ci skip] add build failure record for recipe recipes/pegasuspy * bump updated recipes * centrifuge: add linux-aarch64 build (#48450) * centrifuge: add linux-aarch64 build Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * Add a patch for fixing the build on linux aarch64 Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> --------- Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * Update matchms to 0.26.4 (#48478) * r-spp: add linux-aarch64 build (#48467) * r-spp: add linux-aarch64 build Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * Add run_exports. Use DESCRIPTION as a license file, although it is just mentioning it Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> --------- Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * callerpp: add linux-aarch64 build (#48442) * callerpp: add linux-aarch64 build Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * Allow signed char for Linux aarch64 Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * Bump the version to 0.1.5 Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> --------- Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * genepop: add linux-aarch64 build (#48468) * genepop: add linux-aarch64 build Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * Remove from the blacklist Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * Fix the source url to an existing one, pointing to R-genepop 1.2.2 Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * Reset the build number to 0 Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * Require C++ for the build Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * Use Github tag for v1.2.2. Fix the build Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * Improve the test to deal with the new interactive behavior of the program Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * Simplify the test. It seems `echo -e` does not work well at the CI systems Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> --------- Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * velvet: add linux-aarch64 build (#48469) Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * Update earlgrey to 4.3.0 (#48477) * bump build number * skiplist failures * Update pybiolib to 1.1.2141 (#48479) * [ci run] trigger bulk run * [ci skip] add build failure record for recipe recipes/curves * bump build number for pinnings * [ci run] trigger bulk run * [ci skip] add build failure record for recipe recipes/curves * skiplist * add run exports * bump build number * [ci run] trigger bulk run * [ci run] trigger bulk run --------- Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> Co-authored-by: BiocondaBot <BiocondaBot@users.noreply.github.com> Co-authored-by: Ryan Dale <ryan.dale@nih.gov> Co-authored-by: Johannes Koester <johannes.koester@uni-due.de> Co-authored-by: Martin Grigorov <martin-g@users.noreply.github.com> Co-authored-by: Bioconda Bot <47040946+BiocondaBot@users.noreply.github.com>
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